PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067023
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 150aa    MW: 16873.3 Da    PI: 9.3573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067023genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-1377126255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +ykGVr ++ +g + AeI  p     +  r++lg+f t eeAa+a + a+k ++g
  PGSC0003DMP400067023  77 RYKGVRKRP-WGTYGAEITNPI----QkVRVWLGTFKTMEEAARAFDTAAKMYYG 126
                           6********.*******99962....35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-2977140IPR001471AP2/ERF domain
PROSITE profilePS5103220.96977134IPR001471AP2/ERF domain
PfamPF008472.3E-977126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2677135IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-1977135IPR016177DNA-binding domain
CDDcd000185.17E-2777136No hitNo description
PRINTSPR003671.4E-97889IPR001471AP2/ERF domain
PRINTSPR003671.4E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVTIIEGRIA RRDGCMDRYV PHGSQTERQR VVVVEVRLGC KEYPYSIPLA FFSIGKEKND  60
VVTATATTVV VPPNEVRYKG VRKRPWGTYG AEITNPIQKV RVWLGTFKTM EEAARAFDTA  120
AKMYYGPNAK LNFPQTNEDN LENANNLET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1571135873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-71HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163301.14e-53PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLM1DW371e-107M1DW37_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000953481e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1725235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-24ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]