PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067146
Common NameLOC102583344
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 189aa    MW: 20350.7 Da    PI: 4.804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067146genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181465155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          + ykG+r++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  PGSC0003DMP400067146 14 PVYKGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALALKG 65
                          68*******************9.....4489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-121465IPR001471AP2/ERF domain
SMARTSM003807.3E-321579IPR001471AP2/ERF domain
PROSITE profilePS5103222.6691573IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-201575IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-281575IPR001471AP2/ERF domain
CDDcd000182.61E-291675No hitNo description
PRINTSPR003672.6E-71627IPR001471AP2/ERF domain
PRINTSPR003672.6E-75575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSSSGENNGS GRHPVYKGIR RRKSSGKWVS EIREPRSPNR IWLGTFPTPE MAAVAYDVAA  60
LALKGRDAEL NFPNSAPSLP VPATNSPRDI QTAAACAAAA LGAAGDALVG GRSSSNSNSR  120
AVSREVEDNY LMPNNNEYNF MDEDLIFDMP NVIMNMAEGM LLSPPRLNHL PPDDDYIGGA  180
DQNLWNYP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339312.11e-135PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-60ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLM1DWD61e-134M1DWD6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000954711e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-49ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]