PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067181
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 188aa    MW: 21177.3 Da    PI: 5.9392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067181genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-1737127199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k ++ps+v+   +l++pk+f+ +  ++k  +  ++l de+g +++ k+ + k++    l++GW++F  a++L e+D++vF+l+++ +
  PGSC0003DMP400067181  37 FLKCMLPSHVTGGFCLSFPKRFCVSP-LPK-YDANVVLVDEDGDEFSTKYLIGKNG----LSGGWRGFSIAHNLVENDVLVFQLIESCK 119
                           89*********************766.333.4468***************666666....9************************9888 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v+++r+
  PGSC0003DMP400067181 120 F--KVHILRE 127
                           8..9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-2331128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2031129IPR015300DNA-binding pseudobarrel domain
CDDcd100175.22E-2535126No hitNo description
PROSITE profilePS5086311.58937128IPR003340B3 DNA binding domain
SMARTSM010195.1E-1737128IPR003340B3 DNA binding domain
PfamPF023621.2E-1537127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MCIGRKGQTD NSVDISSSAQ LRAEIFQTTL PSEFPHFLKC MLPSHVTGGF CLSFPKRFCV  60
SPLPKYDANV VLVDEDGDEF STKYLIGKNG LSGGWRGFSI AHNLVENDVL VFQLIESCKF  120
KVHILRENCL SQIDVVVVLM NLIVESHNED QNKKMNMCEA NEDKYLEPHE ERKLSLSCMK  180
ERKMNGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018629604.13e-64PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ69V361e-38Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM1DWG31e-137M1DWG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000955061e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-38B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]