PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067317
Common NameLOC107060932
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 231aa    MW: 25952.3 Da    PI: 8.8463
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067317genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer38.52.8e-122172458
           ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                          v+Y eC +   as+  +++DGC+ f p  g  g+++ ++C  C CHRn HRr  +
  PGSC0003DMP400067317 21 VVYGECNRCLLASV--NVIDGCQAFAPG-GPVGSIEFFQCQFCHCHRNVHRRLDV 72
                          79****99999987..89*********8.8889*******************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-112169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-62169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152312.8682370IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MANMLRANQA ARAIYKPKGL VVYGECNRCL LASVNVIDGC QAFAPGGPVG SIEFFQCQFC  60
HCHRNVHRRL DVNNHQVPPA PTQQQAVTQR DVKTEESSNT KNTNHLSHIT AQIFDSPGVS  120
IALAESIMTR ATQKWVYSNK NDGGNKRKKS WDEYIVEEYE KEKPKILANQ LEWTLNIRSE  180
NGKNKKIKKD EDEKPDGFEM YIKAKGKAIK KLHLAQAEES ISSDNHNCPN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067317
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-157HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164998.11e-174PREDICTED: zinc-finger homeodomain protein 7-like
TrEMBLM1DWR51e-173M1DWR5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000956421e-174(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1579845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-11homeobox protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]