PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067343
Common NameLOC107061930
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 123aa    MW: 13603 Da    PI: 10.7746
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067343genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-19446345
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          i+  sn  vtfskRr g++KKA+EL++LC+a++ ++ifs +gk
  PGSC0003DMP400067343  4 IKKASNLGVTFSKRRVGLFKKASELCTLCGAKIVIVIFSLDGK 46
                          8899999********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.918146IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-15154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-19278IPR002100Transcription factor, MADS-box
PfamPF003191.7E-19351IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-61631IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-63152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MVKIKKASNL GVTFSKRRVG LFKKASELCT LCGAKIVIVI FSLDGKNVFS FGDPSVDRLV  60
ERFLGRNLPP ANNDVHNQQI VACREAGIRE RNTKLMNLKG VLQMEKNCGE SLREIRKRAD  120
GV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-103HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167464.17e-84PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DWT92e-82M1DWT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000956683e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]