PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067753
Common NameLOC107060127
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 220aa    MW: 25183.8 Da    PI: 4.994
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067753genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-1321481340
                          HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                          + +R + ++KKAeELS+LCd+eva+iif
  PGSC0003DMP400067753 21 LDRRETSLFKKAEELSILCDVEVAIIIF 48
                          5567888*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.708148IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-141294IPR002100Transcription factor, MADS-box
PfamPF003195.8E-121549IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MATKRLRDTR NYSENVRNSI LDRRETSLFK KAEELSILCD VEVAIIIFRL GKIQPITWKP  60
TSLAQDVLTR YLSFIEFKRL EKLVTHEDYL QKKVDKKEEQ ISKLEKMNEA KEMEILFNQL  120
VEGKSIDELD AREMKGLLKV FAAKMAKLDE RKKELNQPPN PPSNKENITL SASPMEESFN  180
DPWFIQTITT LGDGSGIEPA PKEGNDVNVE DDGHSKDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067753
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163074.11e-159PREDICTED: MADS-box protein AGL24-like
TrEMBLM1DXN51e-158M1DXN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000960781e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.15e-15AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]