PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067946
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 152aa    MW: 16882.2 Da    PI: 7.256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067946genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.8e-18959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ie+   rq  +skR+  i KK +EL +LCd+++a+++fs+tg++ +yss
  PGSC0003DMP400067946  9 KKIEDPGARQQFYSKRKGSIVKKSNELGILCDTDIALLMFSPTGEVTTYSS 59
                          67999999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.063161IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-21160IPR002100Transcription factor, MADS-box
CDDcd002663.97E-21280No hitNo description
SuperFamilySSF554557.19E-21267IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-15323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRNKIVMKK IEDPGARQQF YSKRKGSIVK KSNELGILCD TDIALLMFSP TGEVTTYSSG  60
KSFEDIMINA MKQPDELNRR SYEPQVEHIN TVEEADAYKQ YLLGAMERIQ RSKAKLLANQ  120
EFLQRNENVA MALVNAENVA AAGNESSCSN A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-58HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078433.18e-69agamous-like MADS-box protein AGL66
TrEMBLM1DY311e-108M1DY31_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000962711e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-18AGAMOUS-like 30
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]