PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068353
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 246aa    MW: 28389.9 Da    PI: 7.0229
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068353genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.62.1e-11114164355
               G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            l+Wt+eL ++  e+v++LG  +kA Pk++le m v++Lt e +   L kYR+
  PGSC0003DMP400068353 114 NLKWTSELEKKLDEVVRELG--DKAGPKNVLESMCVQDLTKECLTYRLKKYRS 164
                           589****************4..89****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-11110168IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-8113165IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKLKDVWKHV KWHNNKANEK SQHYKANQVY VMDNTSCSKK MQDKKGKSIA NCSEMYQDQA  60
VDSLIEKDEA KRSKRMRSTK EEAQVKRSGP SEKEEDHFLL SKISTERPEK KRRNLKWTSE  120
LEKKLDEVVR ELGDKAGPKN VLESMCVQDL TKECLTYRLK KYRSQKRQAP VGQLVTSNEE  180
HQSNVLNSSN FSADVNELFQ GADIPQPPEV PSVDTLPSSN DYSLNECDDW INEFLELDDF  240
ELKLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068353
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-122HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164912.11e-146PREDICTED: two-component response regulator ORR22-like
TrEMBLM1DZ031e-180M1DZ03_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000966780.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4899714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.19e-09GOLDEN2-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]