PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068365
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 183aa    MW: 21012.5 Da    PI: 4.6831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068365genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.71.2e-1599541128
                   NAM  41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           + ePw++ +   +++   yf ++++k++++ kr +r++ +g Wk +gk kev+++kg+l+g  k+L +  g +++k  + +W+m ey l
  PGSC0003DMP400068365   9 ENEPWQILEG--TNSYTRYFITPQKKQNPKWKRVSRTVGKGAWKPQGKGKEVFDNKGRLMGYVKSLKYTYGkSDNKNANGEWLMTEYYL 95 
                           469***9633..234477**************************************************866366777899*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.2151118IPR003441NAC domain
SuperFamilySSF1019411.31E-1910118IPR003441NAC domain
PfamPF023651.2E-61194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEVVNLYAEN EPWQILEGTN SYTRYFITPQ KKQNPKWKRV SRTVGKGAWK PQGKGKEVFD  60
NKGRLMGYVK SLKYTYGKSD NKNANGEWLM TEYYLNDGYL EAREIKNKGY VICKIKKKRK  120
PNDDNENGVS DEIMNDIEKL IDSSLQLNDD INVEEDDVGD EVLAILDKED DGDPNVEWTS  180
IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120KKKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-177HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348968.11e-129PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1DZ111e-128M1DZ11_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000966901e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-12NAC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]