PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068550
Common NameLOC102597795
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 347aa    MW: 38459 Da    PI: 4.9927
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068550genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.89.8e-2667161297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                           +f+r+w+e Dei +LqGl+d  +++      d++ fy  +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g + s+ ++hd+  ++
  PGSC0003DMP400068550  67 KFHRIWTEPDEIRFLQGLLDGSSENL-FFPRDLNVFYTRFSNTMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDRSLLSPHDRALYD 154
                           699******************77776.4456********************************************************** PP

                DUF573  91 lskkiWg 97 
                           lsk++W+
  PGSC0003DMP400068550 155 LSKQLWH 161
                           ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.3E-2968161IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNSTLPLSQS PQITQPILPS SPNKLPIKRK ATDDPFTSAA GTGAGDGGGA NGGVGEMGSD  60
PKPPPFKFHR IWTEPDEIRF LQGLLDGSSE NLFFPRDLNV FYTRFSNTMS QPYTKSQLSE  120
KLRRLRKKFR VISSRLSKGL DRSLLSPHDR ALYDLSKQLW HPDFSDTSPF NAEKSKKSNL  180
VGVKVSFLPN IYDPDRYGIV PYQDGNGSTC NGVSVNEEVE QGEDEENDGN IEFDDEDGKL  240
SEVNVELDRG EIGDERVEFS RVNGPVRVGV GFGAGDIAAK VVMDVFDECL KDFRNGVVGE  300
RSNLGGILKK ASSDEFEERW KEQRVAELNV LARRMRLVLE HSLQSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360388.10.0PREDICTED: uncharacterized protein LOC102597795
TrEMBLM1DZF30.0M1DZF3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000968750.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-19DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]