PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068563
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 204aa    MW: 24141.6 Da    PI: 4.595
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068563genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.71e-101071911297
                DUF573  12 eivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                           ++++L+ + d+k+ktg  p     ++ +f+  s+  +k+s++ l +Ki  +K+ +++ ++   +++ p ++++ d++if+ls+++Wg
  PGSC0003DMP400068563 107 NLAILRTIWDYKSKTGDFPNPPSIKLLDFIMYSLPiLKISREKLAKKIIAFKNNYNDAWEL--DEDYPGLDRPVDREIFNLSMRLWG 191
                           689******************9999****999996379***********************..9999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF057951.1E-713172IPR008780Plasmodium vivax Vir
PfamPF045044.6E-8107191IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLLENGRKRL RTDDEEEEEG GQKEADGQNG NQESDETEGK TEELDPNGGR KRKRQNDEDG  60
NNEEEEEKER RRAAKRGKQP MSKLGMWKEG RQSDADYYDY DCDYHQNLAI LRTIWDYKSK  120
TGDFPNPPSI KLLDFIMYSL PILKISREKL AKKIIAFKNN YNDAWELDED YPGLDRPVDR  180
EIFNLSMRLW GDQKEFYDDW KWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068563
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-104HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DZG31e-145M1DZG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000968881e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.13e-07DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]