PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068756
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11671.3 Da    PI: 8.6979
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068756genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.62.8e-12246145
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          k+ie+++ r v+fskR+++++  A+   + ++aev v++fs+ gk
  PGSC0003DMP400068756  2 KFIESERDRAVSFSKRKKTLFQDAKKFATRTGAEVGVMLFSPGGK 46
                          79****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-17180IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-8153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.423154IPR002100Transcription factor, MADS-box
PfamPF003195.5E-16350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MKFIESERDR AVSFSKRKKT LFQDAKKFAT RTGAEVGVML FSPGGKPCSY GSTSIEEIIE  60
KFLKVKLEDH QREYAEGKSN YFEALEDLHK ELQTCNEKEK K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8963101e-168HQ896310.1 Solanum tuberosum clone RH201H22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158947.11e-58PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DZV63e-67M1DZV6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000970814e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-17AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]