PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068776
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 220aa    MW: 24837.2 Da    PI: 10.4946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068776genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.8e-1687137255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y GVr++  +g ++AeIrdp     k +r +lg++ t+e+Aa a+++a+ k++g
  PGSC0003DMP400068776  87 RYIGVRRRQ-WGTFAAEIRDP---DrKGARLWLGNYETPEDAALAYDQAAFKIRG 137
                           699***887.**********8...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-2787145IPR001471AP2/ERF domain
PROSITE profilePS5103221.56287145IPR001471AP2/ERF domain
CDDcd000182.32E-2587144No hitNo description
PfamPF008472.7E-1087137IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2087146IPR016177DNA-binding domain
SMARTSM003803.6E-2987151IPR001471AP2/ERF domain
PRINTSPR003672.8E-98899IPR001471AP2/ERF domain
PRINTSPR003672.8E-9127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNINTEFSLS DFDFLESVKQ HLLNDFDFSE YFSPMNLSNV ELPNSPNSSL GSSPSIESHE  60
KSESEVEIIK GPMVVTREKH ASGDWRRYIG VRRRQWGTFA AEIRDPDRKG ARLWLGNYET  120
PEDAALAYDQ AAFKIRGSKA RVNFSHLIGS NMPEPARLIV RHRTRSPKPS AFSFTSLENG  180
TRKRKIDLIN SIAKAKAKAN LFVIIRRGVK TERVGLKII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2288144359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2286151469ATERF1
3gcc_A2e-2286151469ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068776
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769870.11e-110ethylene-responsive transcription factor 2-like
TrEMBLM1DZX11e-159M1DZX1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000971011e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]