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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PGSC0003DMP400068810 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 190aa MW: 21155.9 Da PI: 8.9448 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 74.5 | 8.3e-24 | 14 | 59 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
r +n++ +qvtfskRr+g++KKA+ELS+LC+a+va++++s+++k+y
PGSC0003DMP400068810 14 RMQNQTSKQVTFSKRRAGLFKKASELSTLCGADVAIVVYSPSNKVY 59
578*****************************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 23.535 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 4.7E-31 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.46E-26 | 7 | 81 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-18 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.5E-24 | 14 | 59 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-18 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-18 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 190 aa Download sequence Send to blast |
MRRPNGSRRI QIVRMQNQTS KQVTFSKRRA GLFKKASELS TLCGADVAIV VYSPSNKVYA 60 CGHPSVESIV QKFLRENPTP GTNDPNAKCN EINRKLNMLE RQLEKERKHG QALQALRTEP 120 SHEKLSFSDL KSLCEALEAA DEEVERVASQ LLEANKVFPY QTIGSAFAPL IVRESTSFDF 180 NEGPSQSSE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1egw_A | 6e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 6e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 6e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 6e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 3kov_A | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 8e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | PGSC0003DMP400068810 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975440 | 1e-113 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015081073.1 | 1e-102 | agamous-like MADS-box protein AGL61 | ||||
| TrEMBL | M1DZZ9 | 1e-137 | M1DZZ9_SOLTU; Uncharacterized protein | ||||
| STRING | PGSC0003DMT400097135 | 1e-138 | (Solanum tuberosum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA204 | 24 | 223 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60440.1 | 6e-35 | AGAMOUS-like 62 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | PGSC0003DMP400068810 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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