PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068840
Common NameLOC107062112
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 182aa    MW: 21112.8 Da    PI: 4.7535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068840genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.91.1e-0727511842
                          HHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF 18 ngilKKAeELSvLCdaevaviifss 42
                          + ++ KA+ELS+LCd++  ++if +
  PGSC0003DMP400068840 27 ASLMEKAQELSTLCDVQPGIVIFTP 51
                          579***************9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-82491IPR002100Transcription factor, MADS-box
PfamPF003192.2E-62853IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSNKECLENN TESSGGNTKK NLYEKIASLM EKAQELSTLC DVQPGIVIFT PGKDILWPTE  60
SQAKERFQNY LSFRWDTRND NLVTHETNLE KKKKAQEENI RIMEQENEEK EMELLFNEVI  120
DGKSYLELDA RELKGMIKLI ALKKTKVDER KKQLQEEDQP IKGNDNNIEE KNDSIPKNNY  180
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-134HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167833.11e-129PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLM1E0201e-128M1E020_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000971651e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.12e-06AGAMOUS-like 90
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]