PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400069144

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 165aa MW: 17973.9 Da PI: 4.5655

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400069144	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	23	44	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C++ +++ ++++H ++H PGSC0003DMP400069144 23 QCPICNEIGRTNNEFMSHFQSH 44 8*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MTNNDSLHIM FLRALSSHPT LLQCPICNEI GRTNNEFMSH FQSHPMSQQV IHLAQGFSTL 60 GITSTLVLPP ERLERSTGAE RVMPQTTPPP PLPSSSPPPQ RSYPIRGNND GESVNASSIG 120 IDLNEIPSES TSSQDVPIQN TFSGSHLTNT DDETNDELDL NLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400069144

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M1E0P7	1e-114	M1E0P7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400097469	1e-115	(Solanum tuberosum)

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400069144

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]