PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400069166
Common NameLOC102580032
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 236aa    MW: 27237.7 Da    PI: 5.0078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400069166genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.9e-131650842
                          HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           r+  + kR + ++KKAeE S+LCd++va+ ifs+
  PGSC0003DMP400069166 16 VRNSLLDKRATSLFKKAEEFSILCDIDVAIFIFSP 50
                          4555678**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.339149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-15393IPR002100Transcription factor, MADS-box
PfamPF003198.7E-121451IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDRKRLRNTR NDSENVRNSL LDKRATSLFK KAEEFSILCD IDVAIFIFSP GEIQPIVWKS  60
TDLAKEVLVR YSKFTEEERI KKLMIHERYL SKKVDEKEEK FEKIEKMNEE KEMEILFNQL  120
VEGKNIAELT ARDIQGLLKL FNTKIAKLYE RKEKINQQHQ SSQPQTSRSN IKFPNENATP  180
LPNSMDDLIN DMCFVETMST NHNYFDLGDG NNIDSAPIDG DDISAGDNGH SKDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400069166
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343472.11e-173PREDICTED: MADS-box protein AGL24-like
TrEMBLM1E0R31e-172M1E0R3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000974911e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-16M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]