PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400069253
Common NameLOC107057963
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 197aa    MW: 22070.1 Da    PI: 10.3285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400069253genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-16102150254
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           +ykGVr++k +g+WvAe++dp++   + r++lg+f taeeAa  + +a+ +++
  PGSC0003DMP400069253 102 KYKGVRQRK-WGKWVAEVYDPRT---KGRIWLGTFNTAEEAALVYNKAAIAIK 150
                           8*******9.*******999854...48********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-30102157No hitNo description
SMARTSM003803.3E-30102165IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-19102158IPR016177DNA-binding domain
PROSITE profilePS5103220.402102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-26102157IPR001471AP2/ERF domain
PfamPF008475.5E-11102150IPR001471AP2/ERF domain
PRINTSPR003675.4E-10103114IPR001471AP2/ERF domain
PRINTSPR003675.4E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTSKNKYHEK KVIRKPSKND ATKNSTVQVE GSSSIQPNPA RVYLWGVDLM NLSNHEDKGK  60
VKEEKSKGRD KTRQKKIFSE NENVKAISIE NSKEKPQENV EKYKGVRQRK WGKWVAEVYD  120
PRTKGRIWLG TFNTAEEAAL VYNKAAIAIK GVNAVTNIIK PAPTDLPLAE ITSINPSSKE  180
IDFMNLPSSS LDGDRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16103158662ATERF1
3gcc_A4e-16103158662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400069253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158623.11e-141PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLM1E0Y01e-140M1E0Y0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000975781e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-26cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]