PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000000G1160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 317aa    MW: 33101.6 Da    PI: 5.7851
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000000G1160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.2e-16102166161
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvl 61 
                      f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++y +
  PH01000000G1160 102 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYGF 166
                      89***************************955556888***********************9966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2595166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1699166IPR015300DNA-binding pseudobarrel domain
CDDcd100177.27E-15100166No hitNo description
PfamPF023622.7E-13102166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEFTTTSSRF SKEEEGEEQE LDKEKEEDAE AASPREFPFM TAAGASSSSP TSVSPSAAAS  60
ASASTSVSGS SFRSSDGAGA SGSGGGGGGG GNVEVIEKEH MFDKVVTPSD VGKLNRLVIP  120
KQHAEKYFPL DAAANEKGLL LSFEDRTGKL WRFRYSYWNS SQSYGFDFGN INAAAPARQL  180
LFFGSAGMPP HAPMPQQPPP HPLHITVQPS PVVTASLPMV LDSAPLVNSP TAAAKRVRLF  240
GVNLDSPHPH GGESSHDANA LSLRMPGWQR PTPLRLLELP QHAAAGAAGA ESSAASSPSS  300
SSSSKREAHS SLDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-3897164370B3 domain-containing transcription factor NGA1
5os9_B3e-3897164370B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000000G1160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8552331e-126CR855233.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303A11-B0406H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691551.11e-109PREDICTED: B3 domain-containing protein Os04g0581400-like
SwissprotQ7F9W22e-49Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A0E0KUB91e-112A0A0E0KUB9_ORYPU; Uncharacterized protein
STRINGOPUNC04G20430.11e-113(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-38B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]