PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000000G3800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 293aa    MW: 31218.9 Da    PI: 4.8245
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000000G3800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.1e-35111022102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y ++ed++++++isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+++ F++g+++ll 
  PH01000000G3800  11 FLTKTYAMVEDPSTDDTISWNDSGTAFVVWLPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVGADR---------WEFANDCFRRGERHLLG 95 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                       i+r+k 
  PH01000000G3800  96 GIQRRKG 102
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.54E-347100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-377100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-557100IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3011100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASLAAGTPP FLTKTYAMVE DPSTDDTISW NDSGTAFVVW LPAEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVGADRWE FANDCFRRGE RHLLGGIQRR KGSGAGAPAP TGSITTAIPI  120
SSPPTSSGGE PAVSSSPPRG ASAAGVSGAV AELEEENARL RREKLARARR LCDSVRRLVS  180
RYDHGGEEDW EGDEGPGGGG KPTLFGVTIG GKRSREDGDD EEEDGAEEDG EDEDEDEDDD  240
DERHAARRGS AREGKARRTE LSDLDVLALS VRAAAAARPG GGSRDRKNSS AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-25610315123Heat shock factor protein 1
5d5u_B2e-25610024129Heat shock factor protein 1
5d5v_B2e-25610024129Heat shock factor protein 1
5d5v_D2e-25610024129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000000G3800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444830.0AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976526.11e-123heat stress transcription factor B-2a-like
SwissprotQ7XRX31e-119HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLB6SLK91e-122B6SLK9_MAIZE; Heat shock factor protein 4
STRINGSb06g025710.11e-121(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-48HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]