PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000000G4530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 592aa    MW: 61328.4 Da    PI: 8.5659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000000G4530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0589111123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  PH01000000G4530  89 FVCEVCNKGFQREQNLQLHRRGH 111
                      89*******************88 PP
2zf-C2H212.20.00055166188123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H + +
  PH01000000G4530 166 WKCEKCSKRYAVQSDWKAHSKIC 188
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-688111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.17E-788111No hitNo description
PROSITE profilePS5015711.09489111IPR007087Zinc finger, C2H2
PfamPF121713.9E-589111IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004189111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.17E-7161186No hitNo description
SMARTSM00355130166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MASNSSAAAA AEFFGIRDGD QQDQIKPLIS QQQQQLAAAL PGVATAAPAA SSQGAPTAAP  60
PAKKKRILPD PDAEVIALSP KTLMATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK  120
NPAQVQRRRV YLCPETTCVH HDPARALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD  180
WKAHSKICGT REYRCDCGTL FSRRDSFVTH RAFCDALAQE SARLPPTSLS SLTSHLYGAT  240
NAGNMALSLS QVGSHLTSTL QDGHNHHPSP ELLRLGGAGG GGSGIAARLD HFLSPSGASA  300
FRPLQPPPSS AFFLNAAAGQ DFGEDGSNGP HSFLQAKPFH GLMQLPDLQG NGAGGPGASG  360
ASLFNLGFFA NNGNNSGSSH EHASQGLMSN DQFSGGAGGG GGGGSEASAA GIFGGNFVGG  420
DHVAPAGLYN DQAAMLPHMS ATALLQKAAQ MGATSSANGA ASIFRGFVGA SPHVRPAAPH  480
MDQSDAHLND LMNSLAGGDV NAAGMFGGTN GGPGPGSGMF DPRLCDMEHE VKFSQGGGGR  540
GDMTRDFLGV GGGGIVRGIS TARGDHRSSS DMSSLEAEMK SASSFNGGRM P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35162228369Zinc finger protein JACKDAW
5b3h_F9e-35162228369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393404SGGAGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000000G4530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLQ5UDB60.0Q5UDB6_MAIZE; INDETERMINATE-related protein 9
STRINGGRMZM2G129261_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-101indeterminate(ID)-domain 12