PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000001G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 121aa    MW: 12548.8 Da    PI: 4.3185
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000001G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.28.6e-1385120136
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 
                      rW+++e+laLi++r+em+ ++r+++lk+plWeevs+
  PH01000001G0390  85 RWPREETLALIRIRSEMDATFRDAALKGPLWEEVSR 120
                      8*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.47E-1584120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MQQHQGGGSQ FGVPPPDMGP FSPPPAPGPV PLSSRPPPTS QPQAQQQTRP SYEELAAVSG  60
AGAGDFPDDD MLGDAGGGSG AAGNRWPREE TLALIRIRSE MDATFRDAAL KGPLWEEVSR  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000001G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1017101e-137FP101710.1 Phyllostachys edulis cDNA clone: bphylf025p10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825675.12e-37trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A3L6PWB53e-41A0A3L6PWB5_PANMI; Uncharacterized protein
STRINGBRADI5G17150.12e-35(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152231218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-17GT-2-like 1