PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000001G1650
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family YABBY
Protein Properties Length: 259aa    MW: 27308.9 Da    PI: 7.7708
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000001G1650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY217.83.3e-67232116170
            YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......................lleelkv 77 
                        eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhCt+llsvnl+      aa    +  + +                       l+e+   
  PH01000001G1650  23 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCTNLLSVNLRGLLLPAAAAAANQLPFGQAllsptsphgiideapfqappslLTEQASA 116
                      579*******************************************998544443333344444344557889*99999999888754444444 PP

            YABBY  78 eeenlksnvekeesastsvssekl....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                      + ++++s +++  +++  +s   +      +++ ++p+  p + rP ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+i
  PH01000001G1650 117 NVSSITSSNSSCANNTPATS---MppakAAQREPQLPKSVPsATRPAEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHI 207
                      44444444443333333333...33323344445666655559*************************************************** PP

            YABBY 167 hfgl 170
                      hfgl
  PH01000001G1650 208 HFGL 211
                      **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.3E-7123211IPR006780YABBY protein
SuperFamilySSF470959.16E-8149204IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.5E-4162203IPR009071High mobility group box domain
CDDcd000847.74E-5165201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSSAAPETFS LDHLAQQQQP PAEQEQLCYV HCNFCDTILA VGVPCSSLFK TVTVRCGHCT  60
NLLSVNLRGL LLPAAAAAAN QLPFGQALLS PTSPHGIIDE APFQAPPSLL TEQASANVSS  120
ITSSNSSCAN NTPATSMPPA KAAQREPQLP KSVPSATRPA EKRQRVPSAY NRFIKDEIQR  180
IKASNPDITH REAFSAAAKN WAHFPHIHFG LMPDQGLKKT SIQSQDGAGE CMLFKDGLYA  240
AAAAAAASTA SSMGITPF*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000001G1650
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0994090.0FP099409.1 Phyllostachys edulis cDNA clone: bphylf026i14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.11e-146protein YABBY 5
SwissprotQ01JG21e-147YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-147YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0E0DGP11e-149A0A0E0DGP1_9ORYZ; Uncharacterized protein
STRINGOMERI04G16250.11e-149(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-53YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]