PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000002G2670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 250aa    MW: 26883.7 Da    PI: 8.6936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000002G2670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.71e-31241461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkk.yatgkrknratksgyWkatgkdkevl 93 
                      lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdLp      + e yfF+  +++  ++g   +ra  +g+W+ +gk+k v+
  PH01000002G2670  24 LPIGFRFRPTDEELLLHYLCRKALSCPLPA-DIIPVADLARLHPWDLPGD---ADGERYFFHLPATRcWRKGGGVSRAGGTGVWRVSGKEKLVV 113
                      699***************************.99***************43...45577777766555056899*******************99 PP

              NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++ vg k+tLvf    ++ g +tdW mheyrl
  PH01000002G2670 114 APrCKRPVGAKRTLVFC---HRGGARTDWAMHEYRL 146
                      9867889*********9...677889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-4318183IPR003441NAC domain
PROSITE profilePS5100541.6724183IPR003441NAC domain
PfamPF023653.2E-1925146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVQLPMEGRP GPGGCRLQAG LAGLPIGFRF RPTDEELLLH YLCRKALSCP LPADIIPVAD  60
LARLHPWDLP GDADGERYFF HLPATRCWRK GGGVSRAGGT GVWRVSGKEK LVVAPRCKRP  120
VGAKRTLVFC HRGGARTDWA MHEYRLLPAG LDACAGAAKN SLPHMSCHAA EAKDWVVCRI  180
FKKTTPAHRN GGGAHLPHIR GTVRRRGDAD MPSSPSSASS CVTEACNNGG DGEEEEESSS  240
NSCSVASNWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-292418917171NO APICAL MERISTEM PROTEIN
1ut4_B3e-292418917171NO APICAL MERISTEM PROTEIN
1ut7_A3e-292418917171NO APICAL MERISTEM PROTEIN
1ut7_B3e-292418917171NO APICAL MERISTEM PROTEIN
3swm_A3e-292418920174NAC domain-containing protein 19
3swm_B3e-292418920174NAC domain-containing protein 19
3swm_C3e-292418920174NAC domain-containing protein 19
3swm_D3e-292418920174NAC domain-containing protein 19
3swp_A3e-292418920174NAC domain-containing protein 19
3swp_B3e-292418920174NAC domain-containing protein 19
3swp_C3e-292418920174NAC domain-containing protein 19
3swp_D3e-292418920174NAC domain-containing protein 19
4dul_A3e-292418917171NAC domain-containing protein 19
4dul_B3e-292418917171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000002G2670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951250.0FP095125.1 Phyllostachys edulis cDNA clone: bphyem118e12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184279.12e-99NAC domain-containing protein 83-like
TrEMBLA0A3B6H0V14e-98A0A3B6H0V1_WHEAT; Uncharacterized protein
TrEMBLA0A453GDY44e-98A0A453GDY4_AEGTS; Uncharacterized protein
STRINGPavir.Eb03721.1.p5e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-36NAC domain containing protein 83