PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000003G1900
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 168aa    MW: 19255.9 Da    PI: 8.7926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000003G1900genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.67.5e-47251532128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +pGfrFhPt+eel+ +yL+ kve+ k ++++  i+ vd+y+++PwdLp ++++ ++ke++f+++rd+ky++g+r+nr+t sgyWkatg d+ v 
  PH01000003G1900  25 MPGFRFHPTEEELIEFYLRLKVEDGKrFNIDWLIAFVDLYRFDPWDLPgAQASIGDKELFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVR 118
                      79********************98875788666***************7788889*************************************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkktLvfy g+apkg +++W+m+eyrl
  PH01000003G1900 119 VDGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 153
                      *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5019159IPR003441NAC domain
PROSITE profilePS5100548.13424167IPR003441NAC domain
PfamPF023652.3E-2326153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGGADHHDTA RGGGDDVQAH DMVVMPGFRF HPTEEELIEF YLRLKVEDGK RFNIDWLIAF  60
VDLYRFDPWD LPGAQASIGD KELFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVRVD  120
GNRSIGLKKT LVFYVGKAPK GLRSSWIMNE YRLPHGEADR CQKRCCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-462115314142NO APICAL MERISTEM PROTEIN
1ut4_B2e-462115314142NO APICAL MERISTEM PROTEIN
1ut7_A2e-462115314142NO APICAL MERISTEM PROTEIN
1ut7_B2e-462115314142NO APICAL MERISTEM PROTEIN
3swm_A3e-462115317145NAC domain-containing protein 19
3swm_B3e-462115317145NAC domain-containing protein 19
3swm_C3e-462115317145NAC domain-containing protein 19
3swm_D3e-462115317145NAC domain-containing protein 19
3swp_A3e-462115317145NAC domain-containing protein 19
3swp_B3e-462115317145NAC domain-containing protein 19
3swp_C3e-462115317145NAC domain-containing protein 19
3swp_D3e-462115317145NAC domain-containing protein 19
4dul_A2e-462115314142NAC domain-containing protein 19
4dul_B2e-462115314142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000003G1900
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822212.12e-85NAC domain-containing protein 35-like
SwissprotQ9ZVP82e-74NAC35_ARATH; NAC domain-containing protein 35
TrEMBLB9FYR43e-89B9FYR4_ORYSJ; Uncharacterized protein
STRINGLPERR08G01330.16e-88(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.16e-77NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]