PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000006G0810
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 445aa    MW: 46795 Da    PI: 7.2231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000006G0810genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31232288259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  PH01000006G0810 232 GDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 288
                      5**************************************99.***************8 PP
2WRKY33.11.1e-10388408121
                      ---SS-EEEEEEE--TT-SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                      ldDgy+WrKYGqK+vkg+++p
  PH01000006G0810 388 LDDGYRWRKYGQKVVKGNPHP 408
                      59*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-28228290IPR003657WRKY domain
SuperFamilySSF1182905.23E-25230290IPR003657WRKY domain
SMARTSM007743.8E-33231289IPR003657WRKY domain
PfamPF031062.6E-24233288IPR003657WRKY domain
PROSITE profilePS5081122.71233290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-12374408IPR003657WRKY domain
SuperFamilySSF1182904.58E-9380409IPR003657WRKY domain
PROSITE profilePS5081114.86383408IPR003657WRKY domain
SMARTSM007745.6E-4388436IPR003657WRKY domain
PfamPF031069.4E-7389409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSARPPPPPQ PRLRLALPPR SAAESLFSGA GDASPGPLTL ASALFASDPD VASGGCASSS  60
TAGATSFTQL LIGSLAPPPP PHHLQHHEAE RGRGGVARAG PALSVAPPPG ATSAAAVFTV  120
PPGLSPSGLL GSPGLLFSPA MGGFGMSHQQ VLAQVTAQAS NSPHRMFDHT EQPSFSAAAT  180
SSEALQHMHS AVNMAGISEM TTVTSKNENA TFQPAEASQR YQVNAPVDKP AGDGYNWRKY  240
GQKVVKGSDC PRSYYKCTHP NCPVKKKVEH AEDGQISEII YKGKHNHQRP PNKRAKDGSS  300
SLTEQNEQSN DTTSGLSGAK RDQEAIYGMS EQLSGLSDGD DMDGGESRPH EVDDGENDSK  360
RRNIQISSQK TLTESKIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPSR VPSGIGQIGS  420
ICFCVDITVY LTLCSSGNGS FGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-172312911475WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000006G0810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLA0A060D6R50.0A0A060D6R5_MAIZE; WRKY transcription factor (Fragment)
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-71WRKY DNA-binding protein 3