PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000008G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

ZF-HD

Protein Properties

Length: 180aa MW: 18617.9 Da PI: 5.8666

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000008G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	109.4	1.9e-34	35	90	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr +e PH01000008G0200 35 LVYRECLKNHAASLGGHAVDGCGEFMPSPAANpSDPTSLKCAACGCHRNFHRRLQE 90 78****************************9******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.3E-29	36	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-23	37	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.1E-31	37	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.453	37	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEAVVDVKYR PVLLPNGVTA AAEAKKLRRA PVGELVYREC LKNHAASLGG HAVDGCGEFM 60 PSPAANPSDP TSLKCAACGC HRNFHRRLQE APPSPPRLAA AAAAVSAPHL VHGGHPQRGE 120 ETPEDRLPTA GEDDSEDSDE GLVLLSTVSS GIVLEGAGDG CASPSPRWGR LLGSYAVLE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000008G0200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005636	3e-54	AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBank	AP014965	3e-54	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	3e-54	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462378.2	1e-41	zinc-finger homeodomain protein 9
Refseq	XP_025822641.1	7e-42	zinc-finger homeodomain protein 9-like isoform X2
Swissprot	Q6ER21	1e-37	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	A0A1B6QCI2	3e-40	A0A1B6QCI2_SORBI; Uncharacterized protein
TrEMBL	A0A2T8IH38	2e-40	A0A2T8IH38_9POAL; Uncharacterized protein
TrEMBL	B4FQM0	2e-41	B4FQM0_MAIZE; Uncharacterized protein
STRING	Pavir.J22492.1.p	2e-41	(Panicum virgatum)
STRING	Sb02g024650.1	4e-41	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	8e-28	zinc finger homeodomain 1