PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000009G1450

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WOX

Protein Properties

Length: 265aa MW: 29586.9 Da PI: 6.1033

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000009G1450	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.9e-21	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ PH01000009G1450 93 RQRWTPTAMQLQILENIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	103	2e-33	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq PH01000009G1450 92 ARQRWTPTAMQLQILENIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 155 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-19	88	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.965	89	154	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-17	91	158	IPR009057	Homeodomain-like
SMART	SM00389	9.9E-15	91	158	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-19	93	153	IPR001356	Homeobox domain
CDD	cd00086	3.14E-14	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEWDKAKASS AAAGESADER GGGEGLGYVK VMTDEQMEVL RKQISIYATI CEQLVEMHRA 60 LAAHQDSIAG MRLGNLYCDP LMVAGGHNIT TARQRWTPTA MQLQILENIF DQGNGTPSKQ 120 KIKEITAELS QHGQISETNV YNWFQNRRAR SKRKQAASLP NNAESEAEAD EESPTDKKLK 180 SDRPPHQNMA VRDHNSERIS EMHRFDTDHE QIRGMVYGSN DNSSRSSGSL GQMSFYENIM 240 SNPSIFVPTN AFTSLDDIKL QRSY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000009G1450

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ713172	0.0	KJ713172.1 Stipa purpurea WOX13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	1e-132	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-131	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A287LWF2	1e-139	A0A287LWF2_HORVV; Uncharacterized protein
STRING	MLOC_56124.2	1e-137	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-59	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]