PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000009G1940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 270aa    MW: 30206.8 Da    PI: 7.3378
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000009G1940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY764.5e-2466127259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+++g+ fpr YYrCt++    Cp+ k+ve+  +edp ++ ++Y++eH+++
  PH01000009G1940  66 HDGYQWRKYGQKMIRGNAFPRCYYRCTYHqdhCCPASKHVEQHnSEDPPLFRVIYTNEHTCS 127
                      7***************************988779******9852689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-2452128IPR003657WRKY domain
SuperFamilySSF1182907.45E-2260127IPR003657WRKY domain
SMARTSM007742.4E-3465128IPR003657WRKY domain
PROSITE profilePS5081119.25667129IPR003657WRKY domain
PfamPF031061.1E-2367126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MARRGDNMIS SSGCSNGTHK RLLQDSSGYA QEHAKNLYRL KCLMVVSSNR KVHICTNTDY  60
TYAPYHDGYQ WRKYGQKMIR GNAFPRCYYR CTYHQDHCCP ASKHVEQHNS EDPPLFRVIY  120
TNEHTCSSAA ASDYMASSMH IQQIADASLR KVEMERPPRL QAQCSGGYTT VIKEEKDASV  180
SSLLTVITGC DVAKSDAVHE NTTTLLARNC YNLSPTAARS SHEGSSSSIS PVVLPASDDP  240
KMDFLMESLE SHWFEPLDLG WFKESTHTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-12671261068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000009G1940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814595.11e-112probable WRKY transcription factor 67
TrEMBLA0A0D9YGM01e-111A0A0D9YGM0_9ORYZ; Uncharacterized protein
TrEMBLA0A2T7DF921e-111A0A2T7DF92_9POAL; Uncharacterized protein
STRINGPavir.Eb03559.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-18WRKY DNA-binding protein 55