PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000009G1960
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 310aa    MW: 34600.6 Da    PI: 7.1168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000009G1960genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.3e-22117177359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp ++++tY+ eH+++
  PH01000009G1960 117 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedkQCLASKLVQQENnDDPPLFKVTYTYEHTCN 177
                      9**************************99999*******986516899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-22108177IPR003657WRKY domain
SuperFamilySSF1182901.12E-21108178IPR003657WRKY domain
SMARTSM007749.3E-34115178IPR003657WRKY domain
PfamPF031061.3E-23117176IPR003657WRKY domain
PROSITE profilePS5081116.352117179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAHKKPWDLP PRLTALPEAS LASPRRSRGR AMAGREVRVC GLPLVGKDQT LGRQNDCSST  60
TSDQFFNGNS IIIRRKGLCV VLCWVGALVV SGFRSSDRPH RKDRPSWVKH TFTPHFDGHL  120
WRKYGQKNIK DSAFPRLYYR CSYREDKQCL ASKLVQQENN DDPPLFKVTY TYEHTCNTAP  180
VPTLDVVAEP PDPASDAFLL RFDSTSGHGD AQQLEKERHY QPTPGRPFLM LSFGSNSQLH  240
EQPAFPSELP PAASSSFPSE PLPAPPPSTT DGGDMFSTWD SFRYGLDDHV HFGDHVYLPD  300
NGNDGDDNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-141171761068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000009G1960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186009.11e-104probable WRKY transcription factor 46
TrEMBLA0A287LWL11e-112A0A287LWL1_HORVV; Uncharacterized protein
STRINGTraes_3AL_2297D6E18.11e-107(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-17WRKY DNA-binding protein 38