PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000009G2100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 297aa    MW: 32125.6 Da    PI: 6.6991
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000009G2100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.96.6e-21119179359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK + +++fpr YYrC+++   +Cp++k+v++ s+ dp +  i+Y  eH+++
  PH01000009G2100 119 DGYQWRKYGQKRIVKTNFPRCYYRCSYHrerNCPATKQVQQhSHGDPPLYLIIYVHEHTCH 179
                      9**************************9999********872567*************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-23104180IPR003657WRKY domain
SuperFamilySSF1182905.23E-21113179IPR003657WRKY domain
SMARTSM007741.5E-30117180IPR003657WRKY domain
PROSITE profilePS5081116.053119181IPR003657WRKY domain
PfamPF031066.3E-23119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQAQSRLSVS GGSTSSFDPA DEHEAVVREL TRGHELTARL QAEALHALRG QGQTEATAAF  60
ILREVSHAFT ACLSIMAGSA PAATPRPKTP ESSVSAGARR ARDDSVPRKE TVSSTPHFDG  120
YQWRKYGQKR IVKTNFPRCY YRCSYHRERN CPATKQVQQH SHGDPPLYLI IYVHEHTCHT  180
AASEPEAANS ATNQLDFAGL SWQGVHVLDR RAKEEHDERA LVSSLARVMS CGGGGGVPES  240
SQGRTGGASA SATSFDASDP LPRLGVDEGL DVMDYDVTDT MFLGTSYGLR DDGMLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000009G2100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970387.18e-92probable WRKY transcription factor 4
TrEMBLK3XJP82e-90K3XJP8_SETIT; Uncharacterized protein
STRINGSi002121m3e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-20WRKY DNA-binding protein 70