PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000010G3030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 1311aa    MW: 144838 Da    PI: 5.8596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000010G3030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-0512001225123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F ++ +L+ H+r+ +
  PH01000010G3030 1200 FQCDieFCDMTFETRAELRAHQRNiC 1225
                       899999*****************877 PP
2zf-C2H212.70.0003712251247323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  PH01000010G3030 1225 CTdeSCGKRFSSHKYLKRHQCVH 1247
                       77778***************998 PP
3zf-C2H212.70.0003912831309123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg++F+  s++ rH ++  H
  PH01000010G3030 1283 YKCSapDCGQRFRYVSDYSRHRKKfnH 1309
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023731.0E-361120IPR003347JmjC domain
PROSITE profilePS5118432.3011137IPR003347JmjC domain
SMARTSM005581.4E-241137IPR003347JmjC domain
SuperFamilySSF511973.02E-231133No hitNo description
Gene3DG3DSA:3.30.160.607.3E-411991222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.55912001222IPR007087Zinc finger, C2H2
SMARTSM003551212001222IPR015880Zinc finger, C2H2-like
SMARTSM003552.312231247IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.46412231252IPR007087Zinc finger, C2H2
PROSITE patternPS00028012251247IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-712291253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.5E-1612341286No hitNo description
SMARTSM003553.1E-412531277IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.96512531282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-1212541277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012551277IPR007087Zinc finger, C2H2
SuperFamilySSF576676.95E-612771306No hitNo description
Gene3DG3DSA:3.30.160.602.1E-1012781305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1812831309IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09412831310IPR007087Zinc finger, C2H2
PROSITE patternPS00028012851309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1311 aa     Download sequence    Send to blast
MVYIGMLFSW FAWHVEDHEL HSLNFLHTGA PKTWYAVPGD RAAELEEIIR VHGYGGNPDR  60
LASLAVLGEK TTLMSPEVLV ACGVPCCRLV QHPGEFVVTF PRAYHVGFSH GFNCGEAANF  120
ATPQWLKFAK EAAVRRAVMN YLPMLSHQQL LYLLAVSFIS RAPRELLSGI RTSRLRNRRK  180
EERELLKSID NVVLWEPDVL PSPTVLHPCS SGSKAPEKKS DDGRRIGSFR CNPKDNSSSD  240
GTICTIGTQP KCMSTDCKSS DGMSASKEEK SDADADDEDD LPFDLSIDSG SLTCVACGIL  300
GYPFMAILQP SRKALEEMSL VDRERFKLNC EKENHSNVFP CSLDDGNSGC PFIANRASSP  360
VEQAANFSHE NMKSHKDGVS LTEKELDGPR QQRSNCSHSC SGENILHPCI NTETTEKKIL  420
GDFFGSELSK QTDGGGMDAQ SVEGCADTTN WNTRCTFARP RIFCLQHALE IEELLEGKGG  480
AHALIICHSD YIKLKALAIS IAEEIEFQFD CKDVSLVNAS KSDLHIINIS IDDEGHEEDG  540
RDWTSQMGLN LKYCAKLRKE TPGNQEQLPL SFWGLFSKPS PISVVPNLKW LCRKARTPYK  600
VVGYVSSCNA TATPEKVDPT VTKTKPGTSV NAHDNGKRQQ TFQHCGLLQP SRLQESDDVA  660
EMCMCSEEND QDLHRLINIP IALAEYPMMH QVCEGPDSPP LAAVSAEFTI EQQGVQPAEL  720
SSSATFSVQQ FLDNESIAEE DSMNCISKHE NLDSHNVTSE CKDEQLQVQQ DQENMVLCDN  780
SNRNLVRPCL IKGVPVSKDS HWATVPATLE NEGNCAKTSY CSDTVLETNK SATDDQPEAC  840
DPGAVLVGPK SRCDAMISSV DGQCSLPIGC LASTDDPCST EPLSIAHDLM RDELQAIRNS  900
KMEITYLNPV QVDTSHSNVK AIKLKSNNLT KLQHESPKRD ANISEDVQAA STTAISGEDG  960
KSVYTESNSF DILLGVLAEE SKVADAPGKD EVGKASLTLM TLASNDHSAD DVTQGEVVEM  1020
AGSSVSAALS YKGQTCCNLA TDKLLAIQNS EIQQKRENAE EVDDCNYQGF KDDTGILGRS  1080
VSCVATTFFL AKAGKISGAP KKDQYVDQPH DFRASDVLCR SIGSSNRTDI ICYVRRKRKR  1140
KRKSEINTDS SQSCGSFVRS PCESLRPRTR PAVVEEVAKK TNTVEASAAE KGKRTKVGSF  1200
QCDIEFCDMT FETRAELRAH QRNICTDESC GKRFSSHKYL KRHQCVHSDE RPFKCPWDGC  1260
GMTFKWLWAQ TEHVRVHTGE RPYKCSAPDC GQRFRYVSDY SRHRKKFNHY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-451198130921132Lysine-specific demethylase REF6
6a58_A1e-451198130921132Lysine-specific demethylase REF6
6a59_A1e-451198130921132Lysine-specific demethylase REF6
6ip0_A7e-451151192346Transcription factor jumonji (Jmj) family protein
6ip4_A7e-451151192346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111341139RRKRKR
211341140RRKRKRK
311341142RRKRKRKRK
411361142KRKRKRK
511371142RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000010G3030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229202.10.0lysine-specific demethylase SE14 isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0Q3HKZ20.0A0A0Q3HKZ2_BRADI; Uncharacterized protein
STRINGBRADI1G74997.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.15e-88C2H2 family protein