PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000014G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 480aa    MW: 51676.8 Da    PI: 4.9457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000014G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11329374555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  PH01000014G0340 329 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 374
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.97E-13322378No hitNo description
SuperFamilySSF474593.66E-17322385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17326383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-9329374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDYSGGSYFS SWPNSASESY NFVDGSVGSY AEEGSMPPSG NFMRARSDRN LKFSEHEKNP  60
TMLTNGCLPY NNQTDLLSGE ILSKDKLPHS LLELQQLQNN GNLQINLTPP GILQSNSTPG  120
TFHPQLDTPV LPELSHVLSS SIDSSGSEIS AFLADVHAVS SASTLCSTFQ NASSFMEPVN  180
LEAFSFQGAQ NATMLRKTSH PDGNISIFDN ATLASLHDSK EFINGSISSF ATVQQVQLAT  240
GGLEAQQQEQ NAMRNIPLPT FISGNQTAVT EAQGALIPPK IPPLIHDNKG EYPISHSSDG  300
QPQENSAQGN SVSVKPRVRA RRGQATDPHS IAERLRREKI SERMKNLQDL VPNSNKADKA  360
SMLDEIIDYV KFLQLQVKVL SMSRLGAPGA ILPLLAESQT EGRSNPPLSA STMSQGLLDI  420
PDSEDSFAFE QEVVKLMETS ITSAMQYLQN KGLCLMPIAL ASAISNQKGV AAAAIPPER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000014G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0964570.0FP096457.1 Phyllostachys edulis cDNA clone: bphyem207p22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198859.10.0uncharacterized protein LOC109784671
TrEMBLA0A0A9D1750.0A0A0A9D175_ARUDO; Uncharacterized protein
STRINGTraes_7DS_68E3ACF8E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-53LJRHL1-like 1