PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000017G0270

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 174aa MW: 19383 Da PI: 10.1565

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000017G0270	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.9	1.7e-32	37	141	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+kv tpsdv+k++rlv+pk++ae++ +++e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ PH01000017G0270 37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpfdASSNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 130 89**************************66667899*********************************************6658889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++ ++r+ PH01000017G0270 131 RGRLFIDWRRR 141 999*99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-41	29	143	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.07E-29	34	125	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.84E-25	35	122	No hit	No description
SMART	SM01019	7.7E-21	37	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-29	37	141	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.424	37	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEFTLINRAA TSVAAGGGEH DRSCPSAAEV VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE 60 KYFPFDASSN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV 120 SFGRGVGEAA RGRLFIDWRR RPDVVASFAP PTHRLPLPSI PFAPSIGLSF QSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-65	30	144	1	116	B3 domain-containing transcription factor NGA1
5os9_B	2e-65	30	144	1	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000017G0270

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096459	0.0	FP096459.1 Phyllostachys edulis cDNA clone: bphylf028l17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628752.1	1e-90	B3 domain-containing protein Os03g0120900
Swissprot	Q8LMR9	1e-91	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A0E0K822	9e-91	A0A0E0K822_ORYPU; Uncharacterized protein
STRING	OPUNC03G01540.1	2e-91	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-67	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]