PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000017G0950
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 190aa    MW: 20054.3 Da    PI: 4.9269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000017G0950genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-172373156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + y+G+r++   g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++l+g+
  PH01000017G0950 23 PVYRGIRFRG--GKWVSEIREPRK---SNRIWLGTYATPEMAAAAYDVAALALRGA 73
                     68*****975..*********954...49************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-112372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-272482IPR001471AP2/ERF domain
SMARTSM003809.6E-272486IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-182481IPR016177DNA-binding domain
PROSITE profilePS5103219.6512480IPR001471AP2/ERF domain
CDDcd000181.07E-152582No hitNo description
PRINTSPR003676.1E-72536IPR001471AP2/ERF domain
PRINTSPR003676.1E-76282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MERDQSASLP LPGRRVRADT RHPVYRGIRF RGGKWVSEIR EPRKSNRIWL GTYATPEMAA  60
AAYDVAALAL RGAEAALNFP DTALSRPAPA SSSPDDIRAA AAAAAAMIGP GKCGDPHGAA  120
ASSSGSENKA GDHKRVVDED DVFEMPRLLV SMAEGLMMSP PRLSPATDGA VSPEDEDEDG  180
DGMSLWEHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-121380572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000017G0950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342368e-95AC134236.4 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0056G13, complete sequence.
GenBankAK1089308e-95AK108930.1 Oryza sativa Japonica Group cDNA clone:002-153-A05, full insert sequence.
GenBankAP0149598e-95AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126118e-95CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.15e-77ethylene-responsive transcription factor ERF027
RefseqXP_025880267.15e-77ethylene-responsive transcription factor ERF027
SwissprotQ9SJR01e-41ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA2XBT24e-78A2XBT2_ORYSI; Uncharacterized protein
STRINGONIVA09G11510.11e-77(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-25ERF family protein