PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000018G2720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CPP
Protein Properties Length: 370aa    MW: 40247.1 Da    PI: 8.2075
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000018G2720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.61.2e-1374113242
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      +kk CnC++skClk+YCeCfa+g++C+  C+C++C+N+ e+
  PH01000018G2720  74 KKKCCNCRHSKCLKLYCECFASGVYCDG-CNCTNCFNNVEN 113
                      799*************************.********9875 PP
2TCR51.81.7e-16158197140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  PH01000018G2720 158 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 197
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-1573113IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.82574198IPR005172CRC domain
PfamPF036389.0E-1075110IPR005172CRC domain
SMARTSM011148.4E-20158199IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13161196IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNIDYFSASP YFVIFLQKDV IKISTAEDVC DKTTSASYTQ AGVALALEPS PSSKPESPKP  60
RARLYEGKDG TPTKKKCCNC RHSKCLKLYC ECFASGVYCD GCNCTNCFNN VENEAARREA  120
IDATLERNPD AFRPKIGSSP HANRNNMEVA GDLPSVGKHN KGCHCKKSGC LKKYCECFQA  180
NILCSENCKC MDCKNFEGSE ERRALFQGDH KNSIHMQQAA NAAVNGAIGA TGFPSPSTSR  240
KRKHIDPSLD HSTKEHVAHR NGHLPQAIYQ KNAVPSDGSL PISQPVHPPM MGPFKVAYRP  300
LLADIVQPED VKELCKLLVV VSGEAAKAHA GIALGIMLIL PFAILFVCLS KYDPALCMTY  360
LGNSHSINS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-307820714132Protein lin-54 homolog
5fd3_B1e-307820714132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000018G2720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739830.0AK373983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689950.11e-177PREDICTED: protein tesmin/TSO1-like CXC 5, partial
SwissprotQ9SZD11e-113TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D9V5Y40.0A0A0D9V5Y4_9ORYZ; Uncharacterized protein
TrEMBLB8A9T60.0B8A9T6_ORYSI; Uncharacterized protein
STRINGLPERR01G27270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-104Tesmin/TSO1-like CXC domain-containing protein