PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000019G1890
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 378aa    MW: 43469.5 Da    PI: 8.3445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000019G1890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057091223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cg sF  + +Lk+H+++H
  PH01000019G1890 70 TCQECGSSFQKPAHLKQHMQSH 91
                     6*******************99 PP
2zf-C2H223.11.9e-0797121123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s++rk++L+rH+ +H
  PH01000019G1890  97 FICPleDCPFSYRRKDHLNRHMLKH 121
                      78*********************99 PP
3zf-C2H214.40.00011126151123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++Cp   C++ Fs k n +rH +  H
  PH01000019G1890 126 FTCPmdGCDRKFSIKANIQRHVKEiH 151
                      89********************9988 PP
4zf-C2H215.93.8e-05164187223
                      EET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                      +C+   C+k F+  s Lk+H  +H
  PH01000019G1890 164 VCNeeGCNKAFKYASKLKKHEESH 187
                      588889**************9988 PP
5zf-C2H213.10.00028254278223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++H +  H
  PH01000019G1890 254 KCNfeGCECSFSNKSNLTKHTKAcH 278
                      79999****************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355552346IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-96689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.2746996IPR007087Zinc finger, C2H2
SMARTSM003550.0146991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576673.56E-1282123No hitNo description
Gene3DG3DSA:3.30.160.609.4E-1490123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.09997126IPR007087Zinc finger, C2H2
SMARTSM003552.2E-497121IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-7124152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.29E-7124152No hitNo description
SMARTSM003559.0E-4126151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055126156IPR007087Zinc finger, C2H2
PROSITE patternPS000280128151IPR007087Zinc finger, C2H2
SMARTSM003550.088163187IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452163187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-6164187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SMARTSM0035516195220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
SMARTSM0035511223244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.53E-7236295No hitNo description
PROSITE profilePS5015711.302253283IPR007087Zinc finger, C2H2
SMARTSM003550.68253278IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-5254278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280255278IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4279306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1284310IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSGDEIDGDA RVEETRCRDI RRYKCEFCTV IRSKKCLIRS HMVDHHKDEL DKSDIYKSNG  60
EKVVHERENT CQECGSSFQK PAHLKQHMQS HSDEKPFICP LEDCPFSYRR KDHLNRHMLK  120
HQGKLFTCPM DGCDRKFSIK ANIQRHVKEI HEDGNVTKSG QLAVCNEEGC NKAFKYASKL  180
KKHEESHVKL DYVEVVCCEP GCMKTLTNVE CLKAHTLSCH QYVQCDICGK KHLKKNIKRH  240
LRAHDVVPST ERMKCNFEGC ECSFSNKSNL TKHTKACHDQ AKPFACRFVG CGKVFPYKHV  300
RDNHEKSSAH VYVEGDFEEM DEQLRSRPRG GRKRKAVTVE TLTRKRVTMP CEASSLDDGA  360
EYMRWLLSGG DDSSHTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-187327819188PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-187327819188PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326334RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000019G1890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626855.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-121TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0E0CDW20.0A0A0E0CDW2_9ORYZ; Uncharacterized protein
STRINGOMERI02G00620.10.0(Oryza meridionalis)
STRINGORGLA02G0010700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-123transcription factor IIIA