PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000019G1940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 127aa    MW: 13427.1 Da    PI: 4.4208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000019G1940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-0871111445
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLe 45 
                      ++  rE+ RRd++N+++ +L  l Pk a   +  + +K +iL+
  PH01000019G1940  71 SKACREKMRRDKLNDRYGKLAILTPKpA--LDVDRYEKLAILT 111
                      6789**********************55..79999***99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.89E-561111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-571111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-474111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MMDGGGDPID DFLIGGGGDD GDLAIFCDGV PTLTGDGGLG IEDASGDACG LEQSNLGKRG  60
RDEPSSSGPK SKACREKMRR DKLNDRYGKL AILTPKPALD VDRYEKLAIL TPKPSLDVES  120
MYLHISV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000019G1940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0994980.0FP099498.1 Phyllostachys edulis cDNA clone: bphylf049h19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810276.12e-46transcription factor ILR3-like
TrEMBLA0A2S3GKI45e-45A0A2S3GKI4_9POAL; Uncharacterized protein
STRINGSi018232m8e-45(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-09bHLH family protein