PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000022G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 175aa    MW: 18839.8 Da    PI: 4.2612
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000022G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-181159355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p     +  +r++lg+f+ta +Aa a+++a+++++ 
  PH01000022G0050 11 YRGVRQRL-WGKWVAEIREP-----NhgRRHWLGTFDTAVDAALAYDRAARAIHS 59
                     9****999.**********9.....336***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.73E-281069No hitNo description
Gene3DG3DSA:3.30.730.108.3E-291068IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-211067IPR016177DNA-binding domain
SMARTSM003801.6E-311073IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451067IPR001471AP2/ERF domain
PfamPF008479.4E-121157IPR001471AP2/ERF domain
PRINTSPR003674.1E-91122IPR001471AP2/ERF domain
PRINTSPR003674.1E-93349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGGPENMKHN YRGVRQRLWG KWVAEIREPN HGRRHWLGTF DTAVDAALAY DRAARAIHSP  60
LAPVNFPAVS TAAAPGQCEP ASCSLSAAAV SVFEEHEVEP VPAQGGCTGN AQHRDASSAA  120
PEEMFADYLD DIAMYIDVDA VTEMVASYPD IKSEDWQVDE LDTDVVDSPL WGAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17867463ATERF1
3gcc_A5e-17867463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000022G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1359244e-41AC135924.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0486C01, complete sequence.
GenBankAK1025594e-41AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
GenBankAK1038224e-41AK103822.1 Oryza sativa Japonica Group cDNA clone:J033147H24, full insert sequence.
GenBankAK1098554e-41AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence.
GenBankAP0149614e-41AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-41CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8342424e-41CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961770.11e-57dehydration-responsive element-binding protein 2D
SwissprotQ65WX13e-32DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1E5VIG79e-58A0A1E5VIG7_9POAL; Uncharacterized protein
STRINGSi024427m3e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.17e-20DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]