PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000023G2170

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 196aa MW: 21555.8 Da PI: 11.4496

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000023G2170	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30	1.3e-09	19	80	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + PH01000023G2170 19 CWTTDETLALARAYTARRLAVGRAHLTSADWAAVAAAATP---SKTARQCRHKVEKLRRRLRSKR 80 8********************************98765...67899*********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.9E-8	18	81	No hit	No description
PROSITE profile	PS50090	6.202	20	73	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MASPPTVTPA SARRVPLPCW TTDETLALAR AYTARRLAVG RAHLTSADWA AVAAAATPSK 60 TARQCRHKVE KLRRRLRSKR RRPCPVLDAI DLLDGPSPYP SPSPSPSPSP PPPASPPPPP 120 PSPPKKRRRA DVEDDGESDV VKALRAIGEG FLRAEHRRME AARETQRMRM EMALRHLDAQ 180 RRLVDALVGR IVDALD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	KLRRRLR
2	71	77	LRRRLRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000023G2170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098063	0.0	FP098063.1 Phyllostachys edulis cDNA clone: bphylf053e20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001144478.1	9e-73	uncharacterized protein LOC100277445
TrEMBL	B6TUK0	2e-71	B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRING	GRMZM2G320827_P01	4e-72	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24