PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000025G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 355aa    MW: 40815.1 Da    PI: 8.5277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000025G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.4e-1629117299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fk +     +++g +++p kf+++++g+ ++     l+ +sg++W+v +  +k  ++ ++ +GW +F+ka++L+e+D + F+ +g+ +f   v 
  PH01000025G0470  29 FKLM--TGDFAQG-ISIPEKFVNNFNGQITK--GFNLKAPSGETWRVDV--TKIANEPFFMSGWGDFAKAHELQENDLLFFTCSGSYSF--DVL 113
                      5555..4455555.9*******888888555..59999***********..99999999999********************8887777..888 PP

                      EE-S CS
               B3  96 vfrk 99 
                      +f++
  PH01000025G0470 114 IFDA 117
                      8876 PP
2B3474.5e-15251345499
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      +l +s+v ++++l++p kfa+eh +   +s ++ l    + ++W vk+ y  +  r +    W +F ++n+L++g +++F+l++  ++++++v+
  PH01000025G0470 251 ILQKSHVDRKNILIIPSKFAAEHLER--RSHDILLLRpNRKEKWYVKY-YHASLTRGFNCHSWFKFLRDNKLRDGYICIFELMKGaRRATMTVH 341
                      6789*******************533..44455555527779******.5555555445569*******************99877*******9 PP

                      EE-S CS
               B3  96 vfrk 99 
                      v+ k
  PH01000025G0470 342 VIGK 345
                      9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2121120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-2025120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.50625118IPR003340B3 DNA binding domain
CDDcd100174.33E-1727116No hitNo description
SMARTSM010197.5E-928118IPR003340B3 DNA binding domain
PfamPF023626.4E-1328116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-18241345IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-18241344IPR015300DNA-binding pseudobarrel domain
CDDcd100179.71E-17246343No hitNo description
PROSITE profilePS5086312.21248346IPR003340B3 DNA binding domain
SMARTSM010191.8E-8248346IPR003340B3 DNA binding domain
PfamPF023621.1E-12249344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAQKGCESCS KWQEHYYREH MDVSKNRFFK LMTGDFAQGI SIPEKFVNNF NGQITKGFNL  60
KAPSGETWRV DVTKIANEPF FMSGWGDFAK AHELQENDLL FFTCSGSYSF DVLIFDASGC  120
EKVSCFFTNN KGSYMRQHFN NIVGQQAELC LLSDSEDTST PSQLIASPHK ASTSKKLKGK  180
TKTKPRKEPE STNSSNYQVK REVTEEDESD DEHADFNYYY SRFASYLTGE EREEIFSLVS  240
TQSGNPVYVV ILQKSHVDRK NILIIPSKFA AEHLERRSHD ILLLRPNRKE KWYVKYYHAS  300
LTRGFNCHSW FKFLRDNKLR DGYICIFELM KGARRATMTV HVIGKADGRF VLLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000025G0470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619308.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40090-like
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0E0GVZ80.0A0A0E0GVZ8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJF40.0A0A0E0RJF4_ORYRU; Uncharacterized protein
TrEMBLA2ZM930.0A2ZM93_ORYSI; Uncharacterized protein
TrEMBLI1R7J70.0I1R7J7_ORYGL; Uncharacterized protein
STRINGORUFI12G19410.10.0(Oryza rufipogon)
STRINGONIVA03G41670.10.0(Oryza nivara)
STRINGORGLA12G0150300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-27B3 family protein