PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000025G1260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 348aa    MW: 37475.6 Da    PI: 10.67
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000025G1260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31281338359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  PH01000025G1260 281 DEYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCVDDPAMLIVTYEGDHNHT 338
                      9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-18232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33267338IPR003657WRKY domain
PROSITE profilePS5081129.78274337IPR003657WRKY domain
SuperFamilySSF1182909.94E-27277338IPR003657WRKY domain
SMARTSM007748.2E-37279339IPR003657WRKY domain
PfamPF031061.3E-26281337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEVEVANRAA VESCHRVMAL LSQQQDPALL RSIASETGEA CAKFRTVVSL LGNGGGGGGH  60
ARGRLSRRSK PVGFLNHKGF LESSSNTPLG MMSSSATPSP STSPAHLRPR IGAQDSRGLD  120
LVSSSSKSAH QFGAPKLVQP LSMQFQFGAT AHRYPFQQQQ QKLQAEMFKR SNSGISLKFD  180
SPSCTGTMSS ARSFMSSLSM DGSVASLDGK PPFHLIGGPA ASDPVHAHHA PKRRCTGRGE  240
DGSGKCATTG RCHCSKRRKL RIKRSIKVPA ISNKIADIPP DEYSWRKYGQ KPIKGSPHPR  300
GYYKCSSIRG CPARKHVERC VDDPAMLIVT YEGDHNHTRL PTQSTQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20267341275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000025G1260
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664169.10.0PREDICTED: protein WRKY1
SwissprotQ32SG44e-92WRKY1_MAIZE; Protein WRKY1
TrEMBLJ3NEQ30.0J3NEQ3_ORYBR; Uncharacterized protein
STRINGOB12G24610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.14e-69WRKY DNA-binding protein 74