PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000028G0240

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

YABBY

Protein Properties

Length: 252aa MW: 26860.5 Da PI: 7.45

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000028G0240	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	221.9	1.9e-68	23	205	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.hldeslkee.................lleelkveeen 81 +q+Cyv+CnfC+tilav vP +s+fk+vtvrCGhC++llsvnl+ + aa++ ++++l + ll ++++ + PH01000028G0240 23 EQDQLCYVHCNFCDTILAVGVPCSSMFKTVTVRCGHCANLLSVNLRGLLPAAAANQlPFGQALLSPtsphglldelpfqappcLLTAEQTSANV 116 579****************************************9988554444312233333334666988888887777533333333333 PP YABBY 82 lksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + n +++++ ts++ k +++ ++p+ p + rP ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl PH01000028G0240 117 SSNNSCANNTTATSMPPAK-AAQREPQLPKSVPsATRPAEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 205 3333334444444444444.444555566654449***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-70	23	205	IPR006780	YABBY protein
SuperFamily	SSF47095	8.77E-8	143	198	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-4	156	197	IPR009071	High mobility group box domain
CDD	cd00084	7.41E-5	159	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMSSEAPETF SLDHLAQQQP PAEQDQLCYV HCNFCDTILA VGVPCSSMFK TVTVRCGHCA 60 NLLSVNLRGL LPAAAANQLP FGQALLSPTS PHGLLDELPF QAPPCLLTAE QTSANVSSNN 120 SCANNTTATS MPPAKAAQRE PQLPKSVPSA TRPAEKRQRV PSAYNRFIKD EIQRIKASNP 180 DITHREAFSA AAKNWAHFPH IHFGLMPDQG LKKTSIQSQD GTGECMLFKD GLYAAAAAAA 240 ATAASSMGVA PF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000028G0240

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099409	0.0	FP099409.1 Phyllostachys edulis cDNA clone: bphylf026i14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634596.1	1e-134	protein YABBY 5
Swissprot	Q01JG2	1e-135	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-135	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0D9W7L7	1e-136	A0A0D9W7L7_9ORYZ; Uncharacterized protein
STRING	LPERR04G16190.1	1e-136	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-65	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]