PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000028G2500

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

TCP

Protein Properties

Length: 196aa MW: 20554.6 Da PI: 10.788

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000028G2500	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.3	4.2e-28	51	129	5	83
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssas 83 + ++ h kv+gR+RRvR+++ caar+F+L++eLG+++d++tieW l a+p+i ++tg+++ +a +c+++ s +as PH01000028G2500 51 AQGGKDKHIKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEW-LPPAEPSILAATGSGTAPAvFSCSSAPSTTTAS 129 55679***************************************.789*********8888844442222211111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.2E-23	53	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.035	54	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MASRGAATFQ FCRPMAMPTP TPLPQSMTMP FTAAPADVVV PAPKKASAGA AQGGKDKHIK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLPPA EPSILAATGS GTAPAVFSCS 120 SAPSTTTASP LLGKRPRQDQ ETPSFWEALQ PAQPVAWGLS PSQEAQAYAS VAQGHHLNLL 180 FALSGAARRP EKESR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000028G2500

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064708	1e-106	AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBank	AL663019	1e-106	AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBank	AP014960	1e-106	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635777.1	4e-83	transcription factor TCP21
TrEMBL	A0A3B6C9W3	3e-90	A0A3B6C9W3_WHEAT; Uncharacterized protein
TrEMBL	A0A446MIR8	3e-90	A0A446MIR8_TRITD; Uncharacterized protein
STRING	Traes_2BL_4B6057E06.1	5e-91	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-30	TCP family protein