PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000031G1420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 1184aa    MW: 130032 Da    PI: 10.0632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000031G1420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009610901112323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       Cp   Cgk F ++ +L +H ++H
  PH01000031G1420 1090 CPvkGCGKKFFSHKYLLQHRKVH 1112
                       9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.9E-142667IPR003349JmjN domain
PROSITE profilePS5118313.2732768IPR003349JmjN domain
PfamPF023754.3E-112861IPR003349JmjN domain
Gene3DG3DSA:3.30.160.607.9E-510571087IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551110651087IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61210881117IPR007087Zinc finger, C2H2
SMARTSM003550.6210881112IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-610901116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028010901112IPR007087Zinc finger, C2H2
SuperFamilySSF576674.2E-1011041146No hitNo description
Gene3DG3DSA:3.30.160.606.5E-911171142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001811181142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40611181147IPR007087Zinc finger, C2H2
PROSITE patternPS00028011201142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-711361170No hitNo description
Gene3DG3DSA:3.30.160.607.7E-911431171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.711481174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.42911481179IPR007087Zinc finger, C2H2
PROSITE patternPS00028011501174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1184 aa     Download sequence    Send to blast
MRSSPSPPAP GAAAELAPPW LKSLPLAPEF HPTAAEFVDP VAYILKIEAA AVPFGICKVV  60
PPCPPPPKKL GLCPRRPRPA LKPVWISSHR YTLPQFETKA AAARKSLLAR LNVPASKHLS  120
PLDLEALFWR ASADRPVAAE YAGLGFPPLL RPPEPAGGGG GARGGYGVEH ARRGKKPRLA  180
VAVHAGGSRR GHHADAVRRH DVQLVRVARR GPRPAQPQLH ALRGPQDVIG AECRGVRGHF  240
SRILSQRFQP REPSIGAMEP RSSRLKEKKK GEGEQLVKKI FVRNVIEDNE LLGCLLNDGS  300
SCIILPINAH DGPVLSALRS RSQSKTKSRI SDGLCSSGEA LEASGCLPLN GTLDWKGEIR  360
KCSALSSSKD NSLSVCSVKK VPPTTCMDGC VNMPSSSHTH NAEADKGDII SAAGLLDQGL  420
LSCVTCGILS FSCVAVVKPR ECTAKYLMSS DYNLINDQLV GSGGSNLTDA LRSERTDGGI  480
LRSGFELYGN EIISDAPLNR SSALDLLASA YGDQSDSDED IRNKKIQVSL DSSELSRHIT  540
ESLANISSNV CFDGMKVSAS SKECQQRPSS QSSQCIGSSD MSNGPRGIRT RNKYQLKMVL  600
SEGFLPKKLY PAMEKKVQSE PSSSKKFLKE PLDVSGTAYD ASCNGTTISM GGPRSSTTTT  660
NNLNTSILKS DKDSSRMHVF CLEHAIEVGK QLQAIGGARI ILLCRPEYPK IEAEARSLAA  720
EMEVEYDWND IHFREANMED REMIQEVLRD EEAIPTNSDW AVKLGINLYY SANLAKSPLY  780
SKQMPYNRVI YRAFGCNSPN NSPVKLKTYE RRQGRQKKII FAGRWCGKVW MSNQVHPYLA  840
HRIESREQEE ADGISSYHLD KKSKVVPVDN SSRVAASKRN SSTSTAVTKS SKKRENKPLG  900
KTNTKRPKHT EEDNSKALKG ASEISSSSPA GMVLRSSSRI ANRENKLKSK MTEEDDGPAS  960
RPKSKVREDN DGPASHLRAK PLKQKAKVEA KKQMKKSSGE KRRAPSAPKD EEEQPSAIDG  1020
CSMSSDTKQE LSLHKPRTRA EAKKQVKKTS GEKKTPRAPK HEEEYSCSIE GCSMSFGTKQ  1080
ELSLHKRDIC PVKGCGKKFF SHKYLLQHRK VHTDDRPLKC PWKGCDMAFK WPWARTEHLR  1140
VHTGDRPYVC HEPGCAQTFR FVSDFSRHKR KTGHSTKKTK ANR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-621065117923137Lysine-specific demethylase REF6
6a58_A3e-621065117923137Lysine-specific demethylase REF6
6a59_A3e-621065117923137Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000031G1420
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815151.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2S3HNW70.0A0A2S3HNW7_9POAL; Uncharacterized protein
STRINGPavir.J31927.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-59relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]