PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000032G1740
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 235aa    MW: 23830.8 Da    PI: 10.034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000032G1740genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-203283156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++ a+++++g+
  PH01000032G1740 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDTAAREFRGA 83
                     68********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-143282IPR001471AP2/ERF domain
CDDcd000186.38E-313290No hitNo description
SMARTSM003804.5E-373396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-323390IPR001471AP2/ERF domain
PROSITE profilePS5103224.3293390IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-223391IPR016177DNA-binding domain
PRINTSPR003673.2E-113445IPR001471AP2/ERF domain
PRINTSPR003673.2E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPRPAEQVP VQSATGHGLG VGGGVGGGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDTAAREF RGAKAKTNFP PPARSPVVGG GGGGSPSSNS TVESSGGGSG  120
GVQAPIQAMP LPPALDLDLF HRAAVAGAGV RFPFKGYPVV RPAPHPYFFY GQAAAAAAGY  180
RMMKLSSPVT VATVAQSDSD CSSVVDLAPS PPAVTAKKAV PFDLDLNGPP PAEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-222990163ATERF1
3gcc_A2e-222990163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000032G1740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006320.0FP100632.1 Phyllostachys edulis cDNA clone: bphylf032b21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564396.12e-90ethylene-responsive transcription factor 8
TrEMBLI1HSG84e-89I1HSG8_BRADI; Uncharacterized protein
STRINGBRADI2G52370.17e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.19e-20ethylene response factor 8