PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000033G1560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 213aa    MW: 22588.6 Da    PI: 6.6426
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000033G1560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.63.3e-41491481100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+lapyfp ++p+kf  +h++FGasnv+kll++lpe+ r da+ss+vyeAear+rdPvyG++gv+ +lq+q ++lk++l
  PH01000033G1560  49 PCAACKILRRRCADGCTLAPYFPPTEPAKFTTAHRVFGASNVIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGVVCRLQKQANELKVQL 142
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  PH01000033G1560 143 ASAQAE 148
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.50148149IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-4149146IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSGSTATNS TAQHYCRSMS PPSRVSSCSP PPVLPPAGNA SSPTVVLSPC AACKILRRRC  60
ADGCTLAPYF PPTEPAKFTT AHRVFGASNV IKLLQDLPES SRADAVSSMV YEAEARLRDP  120
VYGCAGVVCR LQKQANELKV QLASAQAELL NAQAQHANLL ALLCVEFAHH RLDQQQPPLP  180
LDLDGGGGGA AYQPLYDSVL DSAAWDEARL WT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-414815110113LOB family transfactor Ramosa2.1
5ly0_B2e-414815110113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000033G1560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539371e-142EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150584.11e-107LOB domain-containing protein 1-like
SwissprotQ9LQR07e-63LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A287P7F41e-111A0A287P7F4_HORVV; Uncharacterized protein
STRINGEMT135031e-106(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-54LOB domain-containing protein 1