PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000035G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 763aa    MW: 81687.6 Da    PI: 6.9751
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000035G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30310366259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+H h+
  PH01000035G0560 310 EDRYSWRKYGQKQVKHSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHSHP 366
                      8****************************************.***************8 PP
2WRKY104.65.3e-33545603159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  PH01000035G0560 545 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 603
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-27303368IPR003657WRKY domain
SuperFamilySSF1182901.83E-24303368IPR003657WRKY domain
PROSITE profilePS5081121.712304368IPR003657WRKY domain
SMARTSM007745.5E-32309367IPR003657WRKY domain
PfamPF031062.6E-22310366IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-37530605IPR003657WRKY domain
SuperFamilySSF1182908.11E-29537605IPR003657WRKY domain
PROSITE profilePS5081137.539540605IPR003657WRKY domain
SMARTSM007744.0E-38545604IPR003657WRKY domain
PfamPF031063.2E-25546603IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDDHIAIEEW KDPNPGSECS MPSFLTEAFP PDAVGEGRSD GYKAGFVKHG LSVGVGSPQG  60
EGQPLPMTPH FGQKSSFRSS FAERMQARAG FSVAKLSMPC IPPAAADSTP SGVPSPYLTI  120
PAGLSPATLL ESPVFLSNAM CEKVGIVIAF DYGMLNWQGQ ASPTTGKLLM LGGTNDNDPI  180
RFESPPIEDG PDAFSFKPLE LKSSQYTAEE KKESLSNNQR PSVPSTEVSV KTETNIQMAQ  240
EANLLGHLNQ QQFNGQALVK SSSHDSKLNR LAPGTVAGSD NASPPDHGQP AAEGDAKGDY  300
PAMATAAPAE DRYSWRKYGQ KQVKHSEYPR SYYKCTHPNC QVKKKVERSH EGHITEIIYK  360
GTHSHPMPTQ SRRPGVPPIH PFSDAQMDAS DNNPPRSQPN VEARSLRHNS VTVQDWRGDG  420
LEATSSPSVP GDLCDTSASM QVHDGAARFE SPEGVDVTFA VSDEVDGDDR VTHGSISQNA  480
ADAEGNELES KRRSLSYLLT LFLSGQCTLQ LAEIPAKLVL VVSAHTRAVR EPRVVIQTTS  540
EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTHPGCSVRK HVERASHDLK SVITTYEGKH  600
NHEVPAARNS GHPSSASGAA GTAPCAGASQ PHAGGARRPE PPSVQDGLMR LGSCGAPLAA  660
FGLQLRNPLA PMSNFPYSLG HAAAALPMPA QLGAVEGLKL SMLAPSMHPL LRHRQAMETA  720
GFMVPKGEVK NEAMPINAAG TSGAAASMYQ QMMSRLPLGH HM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36310606878Probable WRKY transcription factor 4
2lex_A1e-36310606878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000035G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189258.10.0probable WRKY transcription factor 34
TrEMBLA0A3B6AZW40.0A0A3B6AZW4_WHEAT; Uncharacterized protein
TrEMBLA0A446L6R40.0A0A446L6R4_TRITD; Uncharacterized protein
STRINGTraes_2AL_409AB7647.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-115WRKY DNA-binding protein 2