PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000038G1330

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 262aa MW: 29666 Da PI: 8.725

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000038G1330	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.8	2.6e-15	161	250	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k +++s+v + +l lp++f+e++ +k+ +tl de+ +++e ++ ++++ l++GW +F+ +gL +gD vF+l++ ++l+v PH01000038G1330 161 FMKPMLHSHVVRGFWLGLPRRFCETYL-PKHD-SIVTLVDEKDEEFETNY--LAYKNG--LSGGWAGFALCHGLLDGDATVFQLIK--PTTLKV 246 899*********************4.3334.38***********..566555..9********************997..666788 PP EEE- CS B3 95 kvfr 98 +++ PH01000038G1330 247 YIIQ 250 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.0E-18	152	252	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.22E-21	154	250	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.94E-23	159	249	No hit	No description
PROSITE profile	PS50863	11.11	161	252	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-13	161	250	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-15	161	252	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAIEKGMSAY EAARERTVEE NKRKMEALNL RHLSAAISEA PKTPSPMKQK RRRIIEVAVV 60 APSPRRRSRR LANLPEVKYA EVTYLHTLSI IEHGIFSSSA RLSTFCYEVA PDKERTKRSP 120 RKLYESIYLA SRGSISMEAR LEAARKAEEL ESQLDPEYPS FMKPMLHSHV VRGFWLGLPR 180 RFCETYLPKH DSIVTLVDEK DEEFETNYLA YKNGLSGGWA GFALCHGLLD GDATVFQLIK 240 PTTLKVYIIQ ATVDDGNEVT E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	53	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000038G1330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK122017	1e-116	AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633231.1	1e-147	B3 domain-containing protein Os03g0184500
Swissprot	Q10QS9	1e-148	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A0D3FEQ2	1e-146	A0A0D3FEQ2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9Z328	1e-146	A0A0D9Z328_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0G2D5	1e-146	A0A0E0G2D5_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NQP1	1e-146	A0A0E0NQP1_ORYRU; Uncharacterized protein
TrEMBL	I1P8A4	1e-146	I1P8A4_ORYGL; Uncharacterized protein
STRING	OGLUM03G06210.1	1e-147	(Oryza glumipatula)
STRING	ORUFI03G06050.1	1e-147	(Oryza rufipogon)
STRING	OS03T0184500-01	1e-147	(Oryza sativa)
STRING	ONIVA02G06710.1	1e-147	(Oryza nivara)
STRING	ORGLA03G0060000.1	1e-147	(Oryza glaberrima)
STRING	OBART03G06210.1	1e-147	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	7e-46	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]