PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000038G1550
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26035.6 Da    PI: 8.2197
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000038G1550genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.4e-251261251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri++   rqvtfskRr g++KKAeELS+LCdaev +i+fs tgkl+ ++s
  PH01000038G1550 12 RIDSLAARQVTFSKRRRGLFKKAEELSILCDAEVGLIVFSATGKLFQFAS 61
                     899999*****************************************986 PP
2K-box41.17.7e-15881731398
            K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +    +   a+L++e+ +    +R++ Ge+L++L++++Lq+Le+ Le++l ++ + K++ +l++i  l +k  +l een +L++++
  PH01000038G1550  88 DLHAEDSTCARLREELAEASLRLRQMRGEELHRLNVQQLQELEKSLESGLGSVLKAKSQKILDEIYGLERKRMQLIEENSRLKEQV 173
                      55556677899*******9*99*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-33362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.885363IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.67E-29587IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-24525IPR002100Transcription factor, MADS-box
CDDcd002654.28E-37576No hitNo description
PfamPF003194.8E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.5489179IPR002487Transcription factor, K-box
PfamPF014863.7E-1395173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAGKRERIAI RRIDSLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLIVF SATGKLFQFA  60
SSSMKQIIDR YNSHSKTLQK ADELSHLDLH AEDSTCARLR EELAEASLRL RQMRGEELHR  120
LNVQQLQELE KSLESGLGSV LKAKSQKILD EIYGLERKRM QLIEENSRLK EQVSRMSKME  180
MQLGADSEVV YEEGQSSESV TNASYPRAPL DTEDSSDTSL RLGLPLFGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19575373MEF2C
5f28_B2e-19575373MEF2C
5f28_C2e-19575373MEF2C
5f28_D2e-19575373MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000038G1550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0997870.0FP099787.1 Phyllostachys edulis cDNA clone: bphyst018j10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793844.11e-137MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R01e-131MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A3S6K2U01e-148A0A3S6K2U0_BAMML; MADS47
STRINGPavir.Ia04527.1.p1e-138(Panicum virgatum)
STRINGOPUNC03G06100.11e-138(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]